Homo sapiens - hg38 - screen - SCENIC+ databases - Region based

Select motif database: To download the database using zsync_curl

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/hg38_screen_v10_clust.regions_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/hg38_screen_v10_clust.regions_vs_motifs.scores.feather'

# Download database with zsync_curl:
"${ZSYNC_CURL}" "${feather_database_url}.zsync"

Alternatively, you can download the databases directly:

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/hg38_screen_v10_clust.regions_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/hg38_screen_v10_clust.regions_vs_motifs.scores.feather'
feather_database="${feather_database_url##*/}"

# Download database directly (with wget or curl):
wget "${feather_database_url}"
# curl -O "${feather_database_url}"

# Download sha256sum.txt (with wget or curl):
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt
# curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt

# Check if sha256 checksum matches for the downloaded database:
awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c -

# If you downloaded mulitple databases, you can check them all at onces with:
sha256sum -c sha256sum.txt


[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[   ]hg38_screen_v10_clust.regions_vs_motifs.rankings.feather2022-07-07 16:35 33G 
[TXT]hg38_screen_v10_clust.regions_vs_motifs.rankings.feather.sha1sum.txt2022-10-10 14:19 99  
[   ]hg38_screen_v10_clust.regions_vs_motifs.rankings.feather.zsync2022-08-01 20:14 147M 
[   ]hg38_screen_v10_clust.regions_vs_motifs.scores.feather2022-07-07 16:31 13G 
[TXT]hg38_screen_v10_clust.regions_vs_motifs.scores.feather.sha1sum.txt2022-10-10 14:15 97  
[   ]hg38_screen_v10_clust.regions_vs_motifs.scores.feather.zsync2022-07-29 22:16 58M 

Stein Aerts lab, 2022-2023