# Specify database: feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-7species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-10species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-5kb-7species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-5kb-10species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-10kb-7species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-10kb-10species.mc9nr.feather' # Download database with zsync_curl: "${ZSYNC_CURL}" "${feather_database_url}.zsync"
Alternatively, you can download the databases directly:
# Specify database: feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-7species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-10species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-5kb-7species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-5kb-10species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-10kb-7species.mc9nr.feather' # feather_database_url='https://resources.aertslab.org/cistarget/databases/old/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-10kb-10species.mc9nr.feather' feather_database="${feather_database_url##*/}" # Download database directly (with wget or curl): wget "${feather_database_url}" # curl -O "${feather_database_url}" # Download sha256sum.txt (with wget or curl): wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt # curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt # Check if sha256 checksum matches for the downloaded database: awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c - # If you downloaded mulitple databases, you can check them all at onces with: sha256sum -c sha256sum.txt
![]() | Name | Last modified | Size | Description |
---|---|---|---|---|
![]() | Parent Directory | - | ||
![]() | hg19-500bp-upstream-7species.mc9nr.feather | 2018-02-09 14:21 | 1.0G | |
![]() | hg19-500bp-upstream-7species.mc9nr.feather.sha1sum.txt | 2022-12-12 17:02 | 85 | |
![]() | hg19-500bp-upstream-10species.mc9nr.feather | 2018-02-09 14:14 | 1.0G | |
![]() | hg19-500bp-upstream-10species.mc9nr.feather.sha1sum.txt | 2022-12-12 17:03 | 86 | |
![]() | hg19-tss-centered-5kb-7species.mc9nr.feather | 2018-02-09 14:48 | 1.0G | |
![]() | hg19-tss-centered-5kb-7species.mc9nr.feather.sha1sum.txt | 2022-12-12 17:02 | 87 | |
![]() | hg19-tss-centered-5kb-10species.mc9nr.feather | 2018-02-09 14:41 | 1.0G | |
![]() | hg19-tss-centered-5kb-10species.mc9nr.feather.sha1sum.txt | 2022-12-12 17:03 | 88 | |
![]() | hg19-tss-centered-10kb-7species.mc9nr.feather | 2018-02-09 14:35 | 1.0G | |
![]() | hg19-tss-centered-10kb-7species.mc9nr.feather.sha1sum.txt | 2022-12-12 17:02 | 88 | |
![]() | hg19-tss-centered-10kb-10species.mc9nr.feather | 2018-02-09 14:28 | 1.0G | |
![]() | hg19-tss-centered-10kb-10species.mc9nr.feather.sha1sum.txt | 2022-12-12 17:02 | 89 | |
Stein Aerts lab, 2022-2023