Mus musculus - mm10 - screen - SCENIC+ databases - Region based

• scores: Matrix containing motifs as rows and regions as columns and cluster-buster CRM scores as values. To be used with DEM.
• rankings: Matrix containing motifs as rows and regions as columns and and ranking position for each region and motif (based on CRM scores) as values. To be used with cisTarget (R/Python).

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/mus_musculus/mm10/screen/mc_v10_clust/region_based/mm10_screen_v10_clust.regions_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/mus_musculus/mm10/screen/mc_v10_clust/region_based/mm10_screen_v10_clust.regions_vs_motifs.scores.feather'

# Download database with zsync_curl:
"${ZSYNC_CURL}" "${feather_database_url}.zsync"

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/mus_musculus/mm10/screen/mc_v10_clust/region_based/mm10_screen_v10_clust.regions_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/mus_musculus/mm10/screen/mc_v10_clust/region_based/mm10_screen_v10_clust.regions_vs_motifs.scores.feather'
feather_database="${feather_database_url##*/}"

# Download database directly (with wget or curl):
wget "${feather_database_url}"
# curl -O "${feather_database_url}"

# Download sha256sum.txt (with wget or curl):
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt
# curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt

# Check if sha256 checksum matches for the downloaded database:
awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c -

# If you downloaded mulitple databases, you can check them all at onces with:
sha256sum -c sha256sum.txt

	Name	Last modified	Size	Description
	Parent Directory		-
	mm10_screen_v10_clust.regions_vs_motifs.rankings.feather	2022-06-08 15:13	17G
	mm10_screen_v10_clust.regions_vs_motifs.rankings.feather.sha1sum.txt	2022-10-10 14:18	99
	mm10_screen_v10_clust.regions_vs_motifs.rankings.feather.zsync	2022-07-30 06:55	75M
	mm10_screen_v10_clust.regions_vs_motifs.scores.feather	2022-06-08 15:03	7.6G
	mm10_screen_v10_clust.regions_vs_motifs.scores.feather.sha1sum.txt	2022-10-10 14:17	97
	mm10_screen_v10_clust.regions_vs_motifs.scores.feather.zsync	2022-07-28 17:58	34M