Homo sapiens - hg38 - refseq_r80 - SCENIC+ databases - Gene based

• scores: Matrix containing motifs as rows and genes as columns and cluster-buster CRM scores as values. To be used with DEM.
• rankings: Matrix containing motifs as rows and genes as columns and ranking position for each gene and motif (based on CRM scores) as values. To be used with cisTarget (R).

• TSS+/-10kb: 10kb around the TSS (total: 20kb).
• 500bpUp100Dw: 500bp upstream of TSS, and 100bp downstream.

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather'
# Download database with zsync_curl:
"${ZSYNC_CURL}" "${feather_database_url}.zsync"

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather'
# feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/refseq_r80/mc_v10_clust/gene_based/hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather'
feather_database="${feather_database_url##*/}"

# Download database directly (with wget or curl):
wget "${feather_database_url}"
# curl -O "${feather_database_url}"

# Download sha256sum.txt (with wget or curl):
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt
# curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt

# Check if sha256 checksum matches for the downloaded database:
awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c -

# If you downloaded mulitple databases, you can check them all at onces with:
sha256sum -c sha256sum.txt

	Name	Last modified	Size	Description
	Parent Directory		-
	hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather	2022-06-08 16:03	297M
	hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather.sha1sum.txt	2022-10-10 14:13	118
	hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather	2022-06-08 16:04	327M
	hg38_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather.sha1sum.txt	2022-10-10 14:13	116
	hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather	2022-06-08 16:05	298M
	hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather.sha1sum.txt	2022-10-10 14:13	118
	hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather	2022-06-08 16:05	251M
	hg38_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.scores.feather.sha1sum.txt	2022-10-10 14:13	116