Homo sapiens - hg19 - refseq_r45 - v9 databases - Region based

Select motif database:

rankings: Matrix containing motifs as rows and regions as columns and ranking position for each gene and motif (based on CRM scores) as values. To be used with cisTarget (R/Python).

To download the database using zsync_curl

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/region_based/hg19-regions-9species.all_regions.mc9nr.regions_vs_motifs.rankings.feather'
# Download database with zsync_curl:
"${ZSYNC_CURL}" "${feather_database_url}.zsync"

Alternatively, you can download the databases directly:

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/region_based/hg19-regions-9species.all_regions.mc9nr.regions_vs_motifs.rankings.feather'
feather_database="${feather_database_url##*/}"

# Download database directly (with wget or curl):
wget "${feather_database_url}"
# curl -O "${feather_database_url}"

# Download sha256sum.txt (with wget or curl):
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt
# curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt

# Check if sha256 checksum matches for the downloaded database:
awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c -

# If you downloaded mulitple databases, you can check them all at onces with:
sha256sum -c sha256sum.txt

Name	Last modified	Size

Parent Directory		-
hg19-regions-9species.all_regions.mc9nr.regions_vs_motifs.rankings.feather	2022-06-29 17:44	87G
hg19-regions-9species.all_regions.mc9nr.regions_vs_motifs.rankings.feather.sha1sum.txt	2022-10-10 14:19	117

Stein Aerts lab, 2022-2023