Drosophila melanogaster - dm6 - flybase_r6.02 - v8 databases - Gene based

Select motif database:

rankings: Matrix containing motifs as rows and genes as columns and ranking position for each gene and motif (based on CRM scores) as values. To be used with cisTarget (R).

To download the database using zsync_curl

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/drosophila_melanogaster/dm6/flybase_r6.02/mc8nr/gene_based/dm6-5kb-upstream-full-tx-11species.mc8nr.genes_vs_motifs.rankings.feather'

# Download database with zsync_curl:
"${ZSYNC_CURL}" "${feather_database_url}.zsync"

Alternatively, you can download the databases directly:

# Specify database:
feather_database_url='https://resources.aertslab.org/cistarget/databases/drosophila_melanogaster/dm6/flybase_r6.02/mc8nr/gene_based/dm6-5kb-upstream-full-tx-11species.mc8nr.genes_vs_motifs.rankings.feather'
feather_database="${feather_database_url##*/}"

# Download database directly (with wget or curl):
wget "${feather_database_url}"
# curl -O "${feather_database_url}"

# Download sha256sum.txt (with wget or curl):
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt
# curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt

# Check if sha256 checksum matches for the downloaded database:
awk -v feather_database=${feather_database} '$2 == feather_database' sha256sum.txt | sha256sum -c -

# If you downloaded mulitple databases, you can check them all at onces with:
sha256sum -c sha256sum.txt

Name	Last modified	Size

Parent Directory		-
dm6-5kb-upstream-full-tx-11species.mc8nr.genes_vs_motifs.rankings.feather.sha1sum.txt	2022-10-10 14:17	116
dm6-5kb-upstream-full-tx-11species.mc8nr.genes_vs_motifs.rankings.feather	2022-07-20 10:36	746M

Stein Aerts lab, 2022-2023